samtools-1.9-1.4.i586.rpm


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Description

samtools - Tools for manipulating next-generation sequencing data

Property Value
Distribution openSUSE Tumbleweed
Repository Science all
Package name samtools
Package version 1.9
Package release 1.4
Package architecture i586
Package type rpm
Installed size 916.84 KB
Download size 343.13 KB
Official Mirror widehat.opensuse.org
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.

Alternatives

Package Version Architecture Repository
samtools-1.9-1.4.x86_64.rpm 1.9 x86_64 Science
samtools - - -

Requires

Name Value
/usr/bin/perl -
/usr/bin/python -
bgzip -
htsfile -
libc.so.6(GLIBC_2.7) -
libhts.so.2 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libncursesw.so.6 -
libncursesw.so.6(NCURSESTW6_5.7.20081102) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.1) -
libpthread.so.0(GLIBC_2.2) -
libtinfo.so.6 -
libtinfo.so.6(NCURSES6_TINFO_5.0.19991023) -
libtinfo.so.6(NCURSES6_TINFO_5.7.20081102) -
libz.so.1 -
libz.so.1(ZLIB_1.2.3.3) -
perl -
python -
tabix -

Provides

Name Value
samtools = 1.9-1.4
samtools(x86-32) = 1.9-1.4

Download

Type URL
Binary Package samtools-1.9-1.4.i586.rpm
Source Package samtools-1.9-1.4.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Tumbleweed/ science
  2. Install samtools rpm package:
    # zypper install samtools

Files

Path
/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/packages/samtools/NEWS
/usr/share/doc/packages/samtools/README
/usr/share/licenses/samtools/LICENSE
/usr/share/man/man1/samtools.1.gz
/usr/share/man/man1/wgsim.1.gz

See Also

Package Description
samtools-legacy-0.1.19-3.54.i586.rpm Tools for manipulating next-generation sequencing data
samtools-legacy-0.1.19-3.54.x86_64.rpm Tools for manipulating next-generation sequencing data
samtools-legacy-devel-0.1.19-3.54.i586.rpm Header files and libraries for compiling against samtools-legacy
samtools-legacy-devel-0.1.19-3.54.x86_64.rpm Header files and libraries for compiling against samtools-legacy
scalapack-mvapich2-test-2.0.2-53.1.i586.rpm Test programs for ScaLAPACK (mvapich2)
scalapack-mvapich2-test-2.0.2-53.1.x86_64.rpm Test programs for ScaLAPACK (mvapich2)
scalapack-openmpi-test-2.0.2-53.1.i586.rpm Test programs for ScaLAPACK (openmpi)
scalapack-openmpi-test-2.0.2-53.1.x86_64.rpm Test programs for ScaLAPACK (openmpi)
scalapack-openmpi2-test-2.0.2-53.1.i586.rpm Test programs for ScaLAPACK (openmpi2)
scalapack-openmpi2-test-2.0.2-53.1.x86_64.rpm Test programs for ScaLAPACK (openmpi2)
scalapack-openmpi3-test-2.0.2-53.1.i586.rpm Test programs for ScaLAPACK (openmpi3)
scalapack-openmpi3-test-2.0.2-53.1.x86_64.rpm Test programs for ScaLAPACK (openmpi3)
scalapack_2_0_2-gnu-mpich-hpc-module-2.0.2-53.1.i586.rpm Module files for scalapack_2_0_2-gnu-mpich-hpc
scalapack_2_0_2-gnu-mpich-hpc-module-2.0.2-53.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-mpich-hpc
scalapack_2_0_2-gnu-mpich-hpc-test-2.0.2-53.1.i586.rpm Test programs for ScaLAPACK (mpich)
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