openms-2.0.0-7.2.x86_64.rpm


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Description

openms - LC/MS data management and analysis suite

Property Value
Distribution openSUSE Tumbleweed
Repository Science all
Package name openms
Package version 2.0.0
Package release 7.2
Package architecture x86_64
Package type rpm
Installed size 62.61 MB
Download size 9.85 MB
Official Mirror widehat.opensuse.org
OpenMS is an open-source C++ library for LC/MS data management and analyses.
It offers an infrastructure for the rapid development
of mass spectrometry related software.
It comes with a vast variety ready-to-use tools for proteomics and
metabolomics data analysis (TOPPTools) and powerful 2D and
3D visualization(TOPPView).
OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data.
The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.
The TOPP tools are divided into several subgroups:
- Graphical Tools
- File Handling
- Signal Processing and Preprocessing
- Quantitation
- Map Alignment
- Protein/Peptide Identification
- Protein/Peptide Processing
- Targeted Experiments
- Peptide Property Prediction
- Misc

Alternatives

Package Version Architecture Repository
openms-2.0.0-7.2.i586.rpm 2.0.0 i586 Science
openms - - -

Requires

Name Value
libGL.so.1()(64bit) -
libQtCore.so.4()(64bit) -
libQtGui.so.4()(64bit) -
libQtNetwork.so.4()(64bit) -
libQtOpenGL.so.4()(64bit) -
libQtSvg.so.4()(64bit) -
libQtWebKit.so.4()(64bit) -
libboost_math_c99.so.1.58.0()(64bit) -
libboost_regex.so.1.58.0()(64bit) -
libbz2.so.1()(64bit) -
libc.so.6(GLIBC_2.14)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libgcc_s.so.1(GCC_4.0.0)(64bit) -
libglpk.so.36()(64bit) -
libgomp.so.1()(64bit) -
libgomp.so.1(GOMP_1.0)(64bit) -
libgomp.so.1(OMP_1.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
librt.so.1()(64bit) -
librt.so.1(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.1)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.15)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
libsvm.so.2()(64bit) -
libxerces-c 3.1.so()(64bit)
libz.so.1()(64bit) -
openms-data = 2.0.0-7.2

Provides

Name Value
application() -
application(inifileeditor.desktop) -
application(toppas.desktop) -
application(toppview.desktop) -
libOpenMS.so()(64bit) -
libOpenMS_GUI.so()(64bit) -
libOpenSwathAlgo.so()(64bit) -
libSuperHirn.so()(64bit) -
openms = 2.0.0-7.2
openms(x86-64) = 2.0.0-7.2

Download

Type URL
Binary Package openms-2.0.0-7.2.x86_64.rpm
Source Package openms-2.0.0-7.2.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Tumbleweed/ science
  2. Install openms rpm package:
    # zypper install openms

Files

Path
/usr/bin/AdditiveSeries
/usr/bin/BaselineFilter
/usr/bin/CompNovo
/usr/bin/CompNovoCID
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/DTAExtractor
/usr/bin/Decharger
/usr/bin/EICExtractor
/usr/bin/ExecutePipeline
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderIsotopeWavelet
/usr/bin/FeatureFinderMRM
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FidoAdapter
/usr/bin/FileConverter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/GenericWrapper
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRTCalibration
/usr/bin/IDRipper
/usr/bin/INIFileEditor
/usr/bin/ITRAQAnalyzer
/usr/bin/InclusionExclusionListCreator
/usr/bin/InspectAdapter
/usr/bin/InternalCalibration
/usr/bin/IsobaricAnalyzer
/usr/bin/LowMemPeakPickerHiRes
/usr/bin/LowMemPeakPickerHiRes_RandomAccess
/usr/bin/MRMMapper
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSGFPlusAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapAlignerSpectrum
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassTraceExtractor
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MyriMatchAdapter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/OMSSAAdapter
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathWorkflow
/usr/bin/PTModel
/usr/bin/PTPredict
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeakPickerWavelet
/usr/bin/PepNovoAdapter
/usr/bin/PeptideIndexer
/usr/bin/PrecursorIonSelector
/usr/bin/PrecursorMassCorrector
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/ProteinResolver
/usr/bin/RTAnnotator
/usr/bin/RTModel
/usr/bin/RTPredict
/usr/bin/Resampler
/usr/bin/SeedListGenerator
/usr/bin/SimpleSearchEngine
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterBernNorm
/usr/bin/SpectraFilterMarkerMower
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterParentPeakMower
/usr/bin/SpectraFilterScaler
/usr/bin/SpectraFilterSqrtMower
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/TMTAnalyzer
/usr/bin/TOFCalibration
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TextExporter
/usr/bin/TopPerc
/usr/bin/XTandemAdapter
/usr/lib64/OpenMS/libOpenMS.so
/usr/lib64/OpenMS/libOpenMS_GUI.so
/usr/lib64/OpenMS/libOpenSwathAlgo.so
/usr/lib64/OpenMS/libSuperHirn.so
/usr/share/applications/inifileeditor.desktop
/usr/share/applications/toppas.desktop
/usr/share/applications/toppview.desktop
/usr/share/icons/TOPP/
/usr/share/icons/TOPP/pixmaps/INIFileEditor.xpm
/usr/share/icons/TOPP/pixmaps/TOPPAS.xpm
/usr/share/icons/TOPP/pixmaps/TOPPView.xpm

Changelog

2015-05-27 - archie@dellroad.org
- Update to version 2.0.0
+ Copy spec from http://pkgs.fedoraproject.org/cgit/openms.git/
2013-12-19 - archie@dellroad.org
- Fix bug in spec file that broke i586 build
2013-12-18 - archie@dellroad.org
- Add XMLValidtor support for TraML files
- added patches:
* xmlvalidator.patch
2013-12-11 - archie@dellroad.org
- Add fix for TSV reader bug.
- added patches:
* tsvreader.patch
2013-11-14 - archie@dellroad.org
- Update to version 1.11.1.
2013-11-04 - archie@dellroad.org
- Add build fix for cmake versions >= 2.8.12
2013-11-01 - archie@dellroad.org
- Fix broken build
2013-08-31 - archie@dellroad.org
- Update to version 1.11.0.
2013-03-08 - archie@dellroad.org
- Update to version 1.10.0.
2013-02-11 - archie@dellroad.org
- Update License and Summary in spec file.

See Also

Package Description
openms-data-2.0.0-7.2.noarch.rpm The OpenMS data files
openms-devel-2.0.0-7.2.i586.rpm OpenMS header files
openms-devel-2.0.0-7.2.x86_64.rpm OpenMS header files
openms-doc-2.0.0-7.2.noarch.rpm OpenMS documentation
openms-tools-2.0.0-7.2.i586.rpm OpenMS tools
openms-tools-2.0.0-7.2.x86_64.rpm OpenMS tools
openms-tutorials-2.0.0-7.2.i586.rpm OpenMS tutorials
openms-tutorials-2.0.0-7.2.x86_64.rpm OpenMS tutorials
opennurbs-devel-20121024-1.222.i586.rpm Development files for opennurbs
opennurbs-devel-20121024-1.222.x86_64.rpm Development files for opennurbs
opensesame-3.2.5-3.1.noarch.rpm Graphical experiment builder for the social sciences
p4est-0.3.4-1.67.i586.rpm A C library to manage a collection of multiple octrees
p4est-0.3.4-1.67.x86_64.rpm A C library to manage a collection of multiple octrees
p4est-devel-0.3.4-1.67.i586.rpm Development files for p4est
p4est-devel-0.3.4-1.67.x86_64.rpm Development files for p4est
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