openms-2.0.0-7.2.i586.rpm


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Description

openms - LC/MS data management and analysis suite

Property Value
Distribution openSUSE Tumbleweed
Repository Science all
Package name openms
Package version 2.0.0
Package release 7.2
Package architecture i586
Package type rpm
Installed size 60.96 MB
Download size 9.78 MB
Official Mirror widehat.opensuse.org
OpenMS is an open-source C++ library for LC/MS data management and analyses.
It offers an infrastructure for the rapid development
of mass spectrometry related software.
It comes with a vast variety ready-to-use tools for proteomics and
metabolomics data analysis (TOPPTools) and powerful 2D and
3D visualization(TOPPView).
OpenMS offers analyses for various quantitation protocols,
including label-free quantitation, SILAC, iTRAQ, SRM, SWATH.
OpenMS supports the Proteomics Standard Initiative (PSI) formats for MS data.
The OpenMS Proteomics Pipeline is a pipeline for
the analysis of HPLC-MS data.
It consists of several small applications that
can be chained to create analysis pipelines tailored
for a specific problem.
The TOPP tools are divided into several subgroups:
- Graphical Tools
- File Handling
- Signal Processing and Preprocessing
- Quantitation
- Map Alignment
- Protein/Peptide Identification
- Protein/Peptide Processing
- Targeted Experiments
- Peptide Property Prediction
- Misc

Alternatives

Package Version Architecture Repository
openms-2.0.0-7.2.x86_64.rpm 2.0.0 x86_64 Science
openms - - -

Requires

Name Value
libGL.so.1 -
libQtCore.so.4 -
libQtGui.so.4 -
libQtNetwork.so.4 -
libQtOpenGL.so.4 -
libQtSvg.so.4 -
libQtWebKit.so.4 -
libboost_math_c99.so.1.58.0 -
libboost_regex.so.1.58.0 -
libbz2.so.1 -
libc.so.6(GLIBC_2.4) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GCC_4.0.0) -
libgcc_s.so.1(GLIBC_2.0) -
libglpk.so.36 -
libgomp.so.1 -
libgomp.so.1(GOMP_1.0) -
libgomp.so.1(OMP_1.0) -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.1) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
librt.so.1 -
librt.so.1(GLIBC_2.1) -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.1) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libsvm.so.2 -
libxerces-c 3.1.so
libz.so.1 -
openms-data = 2.0.0-7.2

Provides

Name Value
application() -
application(inifileeditor.desktop) -
application(toppas.desktop) -
application(toppview.desktop) -
libOpenMS.so -
libOpenMS_GUI.so -
libOpenSwathAlgo.so -
libSuperHirn.so -
openms = 2.0.0-7.2
openms(x86-32) = 2.0.0-7.2

Download

Type URL
Binary Package openms-2.0.0-7.2.i586.rpm
Source Package openms-2.0.0-7.2.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Tumbleweed/ science
  2. Install openms rpm package:
    # zypper install openms

Files

Path
/usr/bin/AdditiveSeries
/usr/bin/BaselineFilter
/usr/bin/CompNovo
/usr/bin/CompNovoCID
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/DTAExtractor
/usr/bin/Decharger
/usr/bin/EICExtractor
/usr/bin/ExecutePipeline
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderIsotopeWavelet
/usr/bin/FeatureFinderMRM
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FidoAdapter
/usr/bin/FileConverter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/GenericWrapper
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRTCalibration
/usr/bin/IDRipper
/usr/bin/INIFileEditor
/usr/bin/ITRAQAnalyzer
/usr/bin/InclusionExclusionListCreator
/usr/bin/InspectAdapter
/usr/bin/InternalCalibration
/usr/bin/IsobaricAnalyzer
/usr/bin/LowMemPeakPickerHiRes
/usr/bin/LowMemPeakPickerHiRes_RandomAccess
/usr/bin/MRMMapper
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSGFPlusAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapAlignerSpectrum
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassTraceExtractor
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MyriMatchAdapter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/OMSSAAdapter
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathWorkflow
/usr/bin/PTModel
/usr/bin/PTPredict
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeakPickerWavelet
/usr/bin/PepNovoAdapter
/usr/bin/PeptideIndexer
/usr/bin/PrecursorIonSelector
/usr/bin/PrecursorMassCorrector
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/ProteinResolver
/usr/bin/RTAnnotator
/usr/bin/RTModel
/usr/bin/RTPredict
/usr/bin/Resampler
/usr/bin/SeedListGenerator
/usr/bin/SimpleSearchEngine
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterBernNorm
/usr/bin/SpectraFilterMarkerMower
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterParentPeakMower
/usr/bin/SpectraFilterScaler
/usr/bin/SpectraFilterSqrtMower
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/TMTAnalyzer
/usr/bin/TOFCalibration
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TextExporter
/usr/bin/TopPerc
/usr/bin/XTandemAdapter
/usr/lib/OpenMS/libOpenMS.so
/usr/lib/OpenMS/libOpenMS_GUI.so
/usr/lib/OpenMS/libOpenSwathAlgo.so
/usr/lib/OpenMS/libSuperHirn.so
/usr/share/applications/inifileeditor.desktop
/usr/share/applications/toppas.desktop
/usr/share/applications/toppview.desktop
/usr/share/icons/TOPP/
/usr/share/icons/TOPP/pixmaps/INIFileEditor.xpm
/usr/share/icons/TOPP/pixmaps/TOPPAS.xpm
/usr/share/icons/TOPP/pixmaps/TOPPView.xpm

Changelog

2015-05-27 - archie@dellroad.org
- Update to version 2.0.0
+ Copy spec from http://pkgs.fedoraproject.org/cgit/openms.git/
2013-12-19 - archie@dellroad.org
- Fix bug in spec file that broke i586 build
2013-12-18 - archie@dellroad.org
- Add XMLValidtor support for TraML files
- added patches:
* xmlvalidator.patch
2013-12-11 - archie@dellroad.org
- Add fix for TSV reader bug.
- added patches:
* tsvreader.patch
2013-11-14 - archie@dellroad.org
- Update to version 1.11.1.
2013-11-04 - archie@dellroad.org
- Add build fix for cmake versions >= 2.8.12
2013-11-01 - archie@dellroad.org
- Fix broken build
2013-08-31 - archie@dellroad.org
- Update to version 1.11.0.
2013-03-08 - archie@dellroad.org
- Update to version 1.10.0.
2013-02-11 - archie@dellroad.org
- Update License and Summary in spec file.

See Also

Package Description
openms-data-2.0.0-7.2.noarch.rpm The OpenMS data files
openms-devel-2.0.0-7.2.i586.rpm OpenMS header files
openms-devel-2.0.0-7.2.x86_64.rpm OpenMS header files
openms-doc-2.0.0-7.2.noarch.rpm OpenMS documentation
openms-tools-2.0.0-7.2.i586.rpm OpenMS tools
openms-tools-2.0.0-7.2.x86_64.rpm OpenMS tools
openms-tutorials-2.0.0-7.2.i586.rpm OpenMS tutorials
openms-tutorials-2.0.0-7.2.x86_64.rpm OpenMS tutorials
opennurbs-devel-20121024-1.222.i586.rpm Development files for opennurbs
opennurbs-devel-20121024-1.222.x86_64.rpm Development files for opennurbs
opensesame-3.2.5-3.1.noarch.rpm Graphical experiment builder for the social sciences
p4est-0.3.4-1.67.i586.rpm A C library to manage a collection of multiple octrees
p4est-0.3.4-1.67.x86_64.rpm A C library to manage a collection of multiple octrees
p4est-devel-0.3.4-1.67.i586.rpm Development files for p4est
p4est-devel-0.3.4-1.67.x86_64.rpm Development files for p4est
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