gbench-2.6.0-1.74.i586.rpm


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Description

gbench - View and analyze genome sequences

Property Value
Distribution openSUSE Tumbleweed
Repository Science all
Package name gbench
Package version 2.6.0
Package release 1.74
Package architecture i586
Package type rpm
Installed size 65.80 MB
Download size 17.49 MB
Official Mirror widehat.opensuse.org
NCBI Genome Workbench is an integrated application for viewing and analyzing sequence data.
Genome Workbench was developed entirely in-house at NCBI and makes use of the NCBI C++ ToolKit.
The C++ ToolKit provides a convenient and flexible cross-platform API for managing system internals,
database connections, network sockets, and the NCBI data model. In addition, the C++ ToolKit
provides the Object Manager, which abstracts handling of sequences and sequence-related objects.

Alternatives

Package Version Architecture Repository
gbench-2.6.0-1.74.x86_64.rpm 2.6.0 x86_64 Science
gbench - - -

Requires

Name Value
/sbin/ldconfig -
ld linux.so.2
ld linux.so.2(GLIBC_2.3)
libGL.so.1 -
libGLEWmx.so.1.9 -
libGLU.so.1 -
libOSMesa.so.8 -
libX11.so.6 -
libXext.so.6 -
libXpm.so.4 -
libc.so.6(GLIBC_2.15) -
libdl.so.2 -
libdl.so.2(GLIBC_2.0) -
libdl.so.2(GLIBC_2.1) -
libexslt.so.0 -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libgcc_s.so.1(GCC_3.4) -
libgcc_s.so.1(GCC_4.0.0) -
libgcc_s.so.1(GLIBC_2.0) -
libjpeg.so.8 -
libjpeg.so.8(LIBJPEG_8.0) -
liblzo2.so.2 -
libm.so.6 -
libm.so.6(GLIBC_2.0) -
libm.so.6(GLIBC_2.1) -
libm.so.6(GLIBC_2.15) -
libnsl.so.1 -
libpcre.so.1 -
libpng16.so.16 -
libpng16.so.16(PNG16_0) -
libpthread.so.0 -
libpthread.so.0(GLIBC_2.0) -
libpthread.so.0(GLIBC_2.1) -
libpthread.so.0(GLIBC_2.2) -
libpthread.so.0(GLIBC_2.3.2) -
libsqlite3.so.0 -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(CXXABI_1.3.1) -
libstdc++.so.6(GLIBCXX_3.4) -
libstdc++.so.6(GLIBCXX_3.4.10) -
libstdc++.so.6(GLIBCXX_3.4.11) -
libstdc++.so.6(GLIBCXX_3.4.15) -
libstdc++.so.6(GLIBCXX_3.4.9) -
libtiff.so.5 -
libwx_baseu 2.9.so.3(WXU_2.9)
libwx_baseu 2.9.so.3
libwx_baseu_net 2.9.so.3
libwx_baseu_xml 2.9.so.3
libwx_gtk2u_adv 2.9.so.3(WXU_2.9)
libwx_gtk2u_adv 2.9.so.3
libwx_gtk2u_aui 2.9.so.3
libwx_gtk2u_aui 2.9.so.3(WXU_2.9)
libwx_gtk2u_core 2.9.so.3(WXU_2.9)
libwx_gtk2u_core 2.9.so.3
libwx_gtk2u_gl 2.9.so.3
libwx_gtk2u_gl 2.9.so.3(WXU_2.9)
libwx_gtk2u_html 2.9.so.3
libwx_gtk2u_html 2.9.so.3(WXU_2.9)
libwx_gtk2u_qa 2.9.so.3
libwx_gtk2u_richtext 2.9.so.3
libwx_gtk2u_richtext 2.9.so.3(WXU_2.9)
libwx_gtk2u_xrc 2.9.so.3
libxml2.so.2 -
libxml2.so.2(LIBXML2_2.4.30) -
libxml2.so.2(LIBXML2_2.5.0) -
libxml2.so.2(LIBXML2_2.5.8) -
libxml2.so.2(LIBXML2_2.6.0) -
libxml2.so.2(LIBXML2_2.6.8) -
libxslt.so.1 -
libxslt.so.1(LIBXML2_1.0.11) -
libxslt.so.1(LIBXML2_1.0.18) -
libxslt.so.1(LIBXML2_1.0.22) -
libxslt.so.1(LIBXML2_1.1.18) -
libz.so.1 -
libz.so.1(ZLIB_1.2.0) -
libz.so.1(ZLIB_1.2.2) -

Provides

Name Value
gbench = 2.6.0-1.74
gbench(x86-32) = 2.6.0-1.74
libalign access.so
libalign reader.so
libalign_format.so -
libaxf.so -
libbamread.so -
libbiblio.so -
libbiotree.so -
libblast.so -
libblast_services.so -
libblastdb.so -
libblastdb_format.so -
libblastinput.so -
libblastxml.so -
libbz2.so -
libcomposition_adjustment.so -
libcreaders.so -
libdbapi_driver.so -
libegquery.so -
libehistory.so -
libeinfo.so -
libelink.so -
libentrez2.so -
libentrez2cli.so -
libentrezgene.so -
libepost.so -
libesearch.so -
libespell.so -
libesummary.so -
libeutils.so -
libfastme.so -
libgbseq.so -
libgene_info.so -
libgeneral.so -
libgenome_collection.so -
libgui_config.so -
libgui_core.so -
libgui_framework.so -
libgui_glmesa.so -
libgui_graph.so -
libgui_objects.so -
libgui_objutils.so -
libgui_opengl.so -
libgui_print.so -
libgui_utils.so -
libgui_view_align.so -
libid1.so -
libid2.so -
libkdb.so -
libkfg.so -
libkfs.so -
libklib.so -
libkproc.so -
libkrypto.so -
libksrch.so -
liblinkout.so -
libmedline.so -
libncbi bam.so
libncbi_xcache_netcache.so -
libncbi_xcache_sqlite3.so -
libncbi_xloader_bam.so -
libncbi_xloader_blastdb.so -
libncbi_xloader_blastdb_rmt.so -
libncbi_xloader_csra.so -
libncbi_xloader_genbank.so -
libncbi_xreader.so -
libncbi_xreader_cache.so -
libncbi_xreader_id1.so -
libncbi_xreader_id2.so -
libpkg_alignment.so -
libpkg_sequence.so -
libpkg_sequence_edit.so -
libpkg_snp.so -
libpub.so -
libpubmed.so -
libscoremat.so -
libseq.so -
libseqcode.so -
libseqdb.so -
libseqedit.so -
libseqmasks_io.so -
libseqset.so -
libseqsplit.so -
libsequtil.so -
libsnputil.so -
libsra path.so
libsra schema.so
libsradb.so -
libsrapath.so -
libsraread.so -
libsraxf.so -
libsubmit.so -
libtables.so -
libtaxon1.so -
libtest_mt.so -
libuilist.so -
libvalerr.so -
libvalid.so -
libvariation.so -
libvdb.so -
libvfs.so -
libvxf.so -
libw_aln_crossaln.so -
libw_aln_multi.so -
libw_aln_score.so -
libw_aln_table.so -
libw_data.so -
libw_edit.so -
libw_feat_table.so -
libw_gap.so -
libw_gl.so -
libw_grid_widget.so -
libw_hapmap.so -
libw_hit_matrix.so -
libw_macro_edit.so -
libw_object_list.so -
libw_phylo_tree.so -
libw_seq.so -
libw_seq_graphic.so -
libw_seq_text.so -
libw_snp_bins.so -
libw_snp_filter.so -
libw_snp_ld.so -
libw_snp_table.so -
libw_snp_track.so -
libw_snp_utils.so -
libw_taxtree.so -
libw_text_widget.so -
libw_wx.so -
libxalgoalignnw.so -
libxalgoalignsplign.so -
libxalgoalignutil.so -
libxalgoblastdbindex.so -
libxalgocontig_assembly.so -
libxalgodustmask.so -
libxalgophytree.so -
libxalgoseq.so -
libxalgowinmask.so -
libxalnmgr.so -
libxblast.so -
libxblastformat.so -
libxcgi.so -
libxcleanup.so -
libxcompress.so -
libxconnect.so -
libxconnserv.so -
libxformat.so -
libxhtml.so -
libximage.so -
libxncbi.so -
libxnetblast.so -
libxnetblastcli.so -
libxngalign.so -
libxobjedit.so -
libxobjmgr.so -
libxobjread.so -
libxobjreadex.so -
libxobjsimple.so -
libxobjutil.so -
libxobjwrite.so -
libxqueryparse.so -
libxregexp.so -
libxser.so -
libxthrserv.so -
libxutil.so -

Download

Type URL
Binary Package gbench-2.6.0-1.74.i586.rpm
Source Package gbench-2.6.0-1.74.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Tumbleweed/ science
  2. Install gbench rpm package:
    # zypper install gbench

Files

Path
/usr/lib/gbench/
/usr/lib/gbench/bin/blastn
/usr/lib/gbench/bin/blastp
/usr/lib/gbench/bin/blastx
/usr/lib/gbench/bin/gbench-bin
/usr/lib/gbench/bin/gbench_feedback_agent
/usr/lib/gbench/bin/gbench_monitor
/usr/lib/gbench/bin/tblastn
/usr/lib/gbench/bin/tblastx
/usr/lib/gbench/bin/windowmasker
/usr/lib/gbench/etc/accguide.txt
/usr/lib/gbench/etc/algo_urls
/usr/lib/gbench/etc/def_window_layout.asn
/usr/lib/gbench/etc/gbench-objmgr.ini
/usr/lib/gbench/etc/gbench.asn
/usr/lib/gbench/etc/gbench.ini
/usr/lib/gbench/etc/news.ini
/usr/lib/gbench/etc/plugin_config.asn
/usr/lib/gbench/etc/taxlist.txt
/usr/lib/gbench/etc/web_pages.ini
/usr/lib/gbench/etc/align_scores/aa-rasmol-colors
/usr/lib/gbench/etc/align_scores/aa-shapely-colors
/usr/lib/gbench/etc/align_scores/blosum45
/usr/lib/gbench/etc/align_scores/blosum62
/usr/lib/gbench/etc/align_scores/blosum80
/usr/lib/gbench/etc/align_scores/hydropathy
/usr/lib/gbench/etc/align_scores/membrane
/usr/lib/gbench/etc/align_scores/na-colors
/usr/lib/gbench/etc/align_scores/signal
/usr/lib/gbench/etc/align_scores/size
/usr/lib/gbench/etc/blastdb-spec/blast-db-tree.asn
/usr/lib/gbench/etc/patterns/kozak.ini
/usr/lib/gbench/lib/libalign-access.so
/usr/lib/gbench/lib/libalign-reader.so
/usr/lib/gbench/lib/libalign_format.so
/usr/lib/gbench/lib/libaxf.so
/usr/lib/gbench/lib/libbamread.so
/usr/lib/gbench/lib/libbiblio.so
/usr/lib/gbench/lib/libbiotree.so
/usr/lib/gbench/lib/libblast.so
/usr/lib/gbench/lib/libblast_services.so
/usr/lib/gbench/lib/libblastdb.so
/usr/lib/gbench/lib/libblastdb_format.so
/usr/lib/gbench/lib/libblastinput.so
/usr/lib/gbench/lib/libblastxml.so
/usr/lib/gbench/lib/libbz2.so
/usr/lib/gbench/lib/libcomposition_adjustment.so
/usr/lib/gbench/lib/libcreaders.so
/usr/lib/gbench/lib/libdbapi_driver.so
/usr/lib/gbench/lib/libegquery.so
/usr/lib/gbench/lib/libehistory.so
/usr/lib/gbench/lib/libeinfo.so
/usr/lib/gbench/lib/libelink.so
/usr/lib/gbench/lib/libentrez2.so
/usr/lib/gbench/lib/libentrez2cli.so
/usr/lib/gbench/lib/libentrezgene.so
/usr/lib/gbench/lib/libepost.so
/usr/lib/gbench/lib/libesearch.so
/usr/lib/gbench/lib/libespell.so
/usr/lib/gbench/lib/libesummary.so
/usr/lib/gbench/lib/libeutils.so
/usr/lib/gbench/lib/libfastme.so
/usr/lib/gbench/lib/libgbseq.so
/usr/lib/gbench/lib/libgene_info.so
/usr/lib/gbench/lib/libgeneral.so
/usr/lib/gbench/lib/libgenome_collection.so
/usr/lib/gbench/lib/libgui_config.so
/usr/lib/gbench/lib/libgui_core.so
/usr/lib/gbench/lib/libgui_framework.so
/usr/lib/gbench/lib/libgui_glmesa.so
/usr/lib/gbench/lib/libgui_graph.so
/usr/lib/gbench/lib/libgui_objects.so
/usr/lib/gbench/lib/libgui_objutils.so
/usr/lib/gbench/lib/libgui_opengl.so
/usr/lib/gbench/lib/libgui_print.so
/usr/lib/gbench/lib/libgui_utils.so
/usr/lib/gbench/lib/libgui_view_align.so
/usr/lib/gbench/lib/libid1.so
/usr/lib/gbench/lib/libid2.so
/usr/lib/gbench/lib/libkdb.so
/usr/lib/gbench/lib/libkfg.so
/usr/lib/gbench/lib/libkfs.so
/usr/lib/gbench/lib/libklib.so
/usr/lib/gbench/lib/libkproc.so
/usr/lib/gbench/lib/libkrypto.so
/usr/lib/gbench/lib/libksrch.so
/usr/lib/gbench/lib/liblinkout.so
/usr/lib/gbench/lib/libmedline.so
/usr/lib/gbench/lib/libncbi-bam.so
/usr/lib/gbench/lib/libncbi_xcache_netcache.so
/usr/lib/gbench/lib/libncbi_xcache_sqlite3.so
/usr/lib/gbench/lib/libncbi_xloader_bam.so
/usr/lib/gbench/lib/libncbi_xloader_blastdb.so
/usr/lib/gbench/lib/libncbi_xloader_blastdb_rmt.so
/usr/lib/gbench/lib/libncbi_xloader_csra.so
/usr/lib/gbench/lib/libncbi_xloader_genbank.so
/usr/lib/gbench/lib/libncbi_xreader.so
/usr/lib/gbench/lib/libncbi_xreader_cache.so
/usr/lib/gbench/lib/libncbi_xreader_id1.so
/usr/lib/gbench/lib/libncbi_xreader_id2.so
/usr/lib/gbench/lib/libpkg_alignment.so
/usr/lib/gbench/lib/libpkg_sequence.so
/usr/lib/gbench/lib/libpkg_sequence_edit.so
/usr/lib/gbench/lib/libpkg_snp.so
/usr/lib/gbench/lib/libpub.so
/usr/lib/gbench/lib/libpubmed.so
/usr/lib/gbench/lib/libscoremat.so
/usr/lib/gbench/lib/libseq.so
/usr/lib/gbench/lib/libseqcode.so
/usr/lib/gbench/lib/libseqdb.so
/usr/lib/gbench/lib/libseqedit.so
/usr/lib/gbench/lib/libseqmasks_io.so
/usr/lib/gbench/lib/libseqset.so
/usr/lib/gbench/lib/libseqsplit.so
/usr/lib/gbench/lib/libsequtil.so
/usr/lib/gbench/lib/libsnputil.so
/usr/lib/gbench/lib/libsra-path.so
/usr/lib/gbench/lib/libsra-schema.so
/usr/lib/gbench/lib/libsradb.so
/usr/lib/gbench/lib/libsrapath.so
/usr/lib/gbench/lib/libsraread.so
/usr/lib/gbench/lib/libsraxf.so
/usr/lib/gbench/lib/libsubmit.so
/usr/lib/gbench/lib/libtables.so
/usr/lib/gbench/lib/libtaxon1.so
/usr/lib/gbench/lib/libtest_mt.so
/usr/lib/gbench/lib/libuilist.so
/usr/lib/gbench/lib/libvalerr.so
/usr/lib/gbench/lib/libvalid.so
/usr/lib/gbench/lib/libvariation.so
/usr/lib/gbench/lib/libvdb.so
/usr/lib/gbench/lib/libvfs.so
/usr/lib/gbench/lib/libvxf.so
/usr/lib/gbench/lib/libw_aln_crossaln.so
/usr/lib/gbench/lib/libw_aln_multi.so
/usr/lib/gbench/lib/libw_aln_score.so
/usr/lib/gbench/lib/libw_aln_table.so
/usr/lib/gbench/lib/libw_data.so
/usr/lib/gbench/lib/libw_edit.so
/usr/lib/gbench/lib/libw_feat_table.so
/usr/lib/gbench/lib/libw_gap.so
/usr/lib/gbench/lib/libw_gl.so
/usr/lib/gbench/lib/libw_grid_widget.so
/usr/lib/gbench/lib/libw_hapmap.so
/usr/lib/gbench/lib/libw_hit_matrix.so
/usr/lib/gbench/lib/libw_macro_edit.so
/usr/lib/gbench/lib/libw_object_list.so
/usr/lib/gbench/lib/libw_phylo_tree.so
/usr/lib/gbench/lib/libw_seq.so
/usr/lib/gbench/lib/libw_seq_graphic.so
/usr/lib/gbench/lib/libw_seq_text.so
/usr/lib/gbench/lib/libw_snp_bins.so
/usr/lib/gbench/lib/libw_snp_filter.so
/usr/lib/gbench/lib/libw_snp_ld.so
/usr/lib/gbench/lib/libw_snp_table.so
/usr/lib/gbench/lib/libw_snp_track.so
/usr/lib/gbench/lib/libw_snp_utils.so
/usr/lib/gbench/lib/libw_taxtree.so
/usr/lib/gbench/lib/libw_text_widget.so
/usr/lib/gbench/lib/libw_wx.so
/usr/lib/gbench/lib/libxalgoalignnw.so
/usr/lib/gbench/lib/libxalgoalignsplign.so
/usr/lib/gbench/lib/libxalgoalignutil.so
/usr/lib/gbench/lib/libxalgoblastdbindex.so
/usr/lib/gbench/lib/libxalgocontig_assembly.so
/usr/lib/gbench/lib/libxalgodustmask.so
/usr/lib/gbench/lib/libxalgophytree.so
/usr/lib/gbench/lib/libxalgoseq.so
/usr/lib/gbench/lib/libxalgowinmask.so
/usr/lib/gbench/lib/libxalnmgr.so
/usr/lib/gbench/lib/libxblast.so
/usr/lib/gbench/lib/libxblastformat.so
/usr/lib/gbench/lib/libxcgi.so
/usr/lib/gbench/lib/libxcleanup.so
/usr/lib/gbench/lib/libxcompress.so
/usr/lib/gbench/lib/libxconnect.so
/usr/lib/gbench/lib/libxconnserv.so
/usr/lib/gbench/lib/libxformat.so
/usr/lib/gbench/lib/libxhtml.so
/usr/lib/gbench/lib/libximage.so
/usr/lib/gbench/lib/libxncbi.so
/usr/lib/gbench/lib/libxnetblast.so
/usr/lib/gbench/lib/libxnetblastcli.so
/usr/lib/gbench/lib/libxngalign.so
/usr/lib/gbench/lib/libxobjedit.so
/usr/lib/gbench/lib/libxobjmgr.so
/usr/lib/gbench/lib/libxobjread.so
/usr/lib/gbench/lib/libxobjreadex.so
/usr/lib/gbench/lib/libxobjsimple.so
/usr/lib/gbench/lib/libxobjutil.so
/usr/lib/gbench/lib/libxobjwrite.so
/usr/lib/gbench/lib/libxqueryparse.so
/usr/lib/gbench/lib/libxregexp.so
/usr/lib/gbench/lib/libxser.so
/usr/lib/gbench/lib/libxthrserv.so
/usr/lib/gbench/lib/libxutil.so
/usr/lib/gbench/packages/
/usr/lib/gbench/packages/alignment/libpkg_alignment.so
/usr/lib/gbench/packages/alignment/package.manifest
/usr/lib/gbench/packages/sequence/libpkg_sequence.so
/usr/lib/gbench/packages/sequence/package.manifest
/usr/lib/gbench/packages/sequence_edit/libpkg_sequence_edit.so
/usr/lib/gbench/packages/sequence_edit/package.manifest
/usr/lib/gbench/packages/snp/libpkg_snp.so
/usr/lib/gbench/packages/snp/package.manifest
/usr/lib/gbench/share/
/usr/lib/gbench/share/gbench/about.png
/usr/lib/gbench/share/gbench/alignment_set_symbol.png
/usr/lib/gbench/share/gbench/alignment_span_view.png
/usr/lib/gbench/share/gbench/alignment_symbol.png
/usr/lib/gbench/share/gbench/annot_aligns_symbol.png
/usr/lib/gbench/share/gbench/annot_feats_symbol.png
/usr/lib/gbench/share/gbench/annot_folder.png
/usr/lib/gbench/share/gbench/annot_graphs_symbol.png
/usr/lib/gbench/share/gbench/annot_ids_symbol.png
/usr/lib/gbench/share/gbench/annot_item.png
/usr/lib/gbench/share/gbench/annot_locs_symbol.png
/usr/lib/gbench/share/gbench/annot_symbol.png
/usr/lib/gbench/share/gbench/arrow_close.png
/usr/lib/gbench/share/gbench/arrow_open.png
/usr/lib/gbench/share/gbench/attachment_item.png
/usr/lib/gbench/share/gbench/back.png
/usr/lib/gbench/share/gbench/bam_data_source.png
/usr/lib/gbench/share/gbench/barberpole.png
/usr/lib/gbench/share/gbench/bio_tree_container.png
/usr/lib/gbench/share/gbench/broadcast.png
/usr/lib/gbench/share/gbench/broadcast_options.png
/usr/lib/gbench/share/gbench/broadcast_range.png
/usr/lib/gbench/share/gbench/check.png
/usr/lib/gbench/share/gbench/close_container.png
/usr/lib/gbench/share/gbench/cluster_alignment_symbol.png
/usr/lib/gbench/share/gbench/copy.png
/usr/lib/gbench/share/gbench/cross_align_view.png
/usr/lib/gbench/share/gbench/cut.png
/usr/lib/gbench/share/gbench/data_source.png
/usr/lib/gbench/share/gbench/delete.png
/usr/lib/gbench/share/gbench/doc_item.png
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/usr/lib/gbench/share/gbench/error16x16.xpm
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/usr/lib/gbench/share/gbench/feature_table_view.png
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/usr/lib/gbench/share/gbench/gb_data_source.png
/usr/lib/gbench/share/gbench/gbench_about.png
/usr/lib/gbench/share/gbench/gc_assembly.png
/usr/lib/gbench/share/gbench/graphical_view.png
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/usr/lib/gbench/share/gbench/history_folder.png
/usr/lib/gbench/share/gbench/home.png
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Changelog

2012-09-10 - mailaender@opensuse.org
- initial packaging of version 2.6.0

See Also

Package Description
gcad3d-2.352+git20170420.b5668e9-7.46.i586.rpm 3D CAD-CAM application
gcad3d-2.352+git20170420.b5668e9-7.46.x86_64.rpm 3D CAD-CAM application
gdal-2.4.0-96.4.i586.rpm GDAL/OGR - a translator library for raster and vector geospatial data formats
gdal-2.4.0-96.4.x86_64.rpm GDAL/OGR - a translator library for raster and vector geospatial data formats
gdal-devel-2.4.0-96.4.i586.rpm GDAL library header files
gdal-devel-2.4.0-96.4.x86_64.rpm GDAL library header files
gdl-language-0.9.7-1.14.i586.rpm GNU Data Language
gdl-language-0.9.7-1.14.x86_64.rpm GNU Data Language
gdl-language-common-0.9.7-1.14.noarch.rpm Common files for GDL
geant4-data-G4ABLA-3.1-28.20.noarch.rpm Data files for nuclear shell effects in INCL/ABLA hadronic mode
geant4-data-G4EMLOW-7.3-28.20.noarch.rpm Data files for low energy electromagnetic processes
geant4-data-G4ENSDFSTATE-2.2-28.20.noarch.rpm Optional data files for nuclides properties
geant4-data-G4NDL-4.5-28.20.noarch.rpm Neutron data files with thermal cross-sections
geant4-data-G4NEUTRONXS-1.4-28.20.noarch.rpm Data files for evaluated neutron xs on natural composition of elements
geant4-data-G4PII-1.3-28.20.noarch.rpm Data files for shell ionisation cross-sections
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