bowtie-1.1.2-1.198.x86_64.rpm


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Description

bowtie - Fast and memory-efficient short read aligner

Property Value
Distribution openSUSE Tumbleweed
Repository Science all
Package name bowtie
Package version 1.1.2
Package release 1.198
Package architecture x86_64
Package type rpm
Installed size 2.67 MB
Download size 665.68 KB
Official Mirror widehat.opensuse.org
Bowtie is an ultrafast, memory-efficient short read aligner. It aligns short DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to keep its memory footprint small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).

Alternatives

Package Version Architecture Repository
bowtie - - -

Requires

Name Value
/usr/bin/env -
libc.so.6(GLIBC_2.14)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libm.so.6(GLIBC_2.27)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.8)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.20)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -

Provides

Name Value
bowtie = 1.1.2-1.198
bowtie(x86-64) = 1.1.2-1.198

Download

Type URL
Binary Package bowtie-1.1.2-1.198.x86_64.rpm
Source Package bowtie-1.1.2-1.198.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Tumbleweed/ science
  2. Install bowtie rpm package:
    # zypper install bowtie

Files

Path
/usr/bin/bowtie
/usr/bin/bowtie-align-l
/usr/bin/bowtie-align-s
/usr/bin/bowtie-build
/usr/bin/bowtie-build-l
/usr/bin/bowtie-build-s
/usr/bin/bowtie-inspect
/usr/bin/bowtie-inspect-l
/usr/bin/bowtie-inspect-s
/usr/share/doc/packages/bowtie/AUTHORS
/usr/share/doc/packages/bowtie/LICENSE
/usr/share/doc/packages/bowtie/MANUAL
/usr/share/doc/packages/bowtie/NEWS
/usr/share/doc/packages/bowtie/README
/usr/share/doc/packages/bowtie/TUTORIAL
/usr/share/doc/packages/bowtie/VERSION

Changelog

2016-05-05 - flyos@mailoo.org
- Initial release

See Also

Package Description
bowtie2-2.3.4.1-1.93.x86_64.rpm Fast and memory-efficient short read aligner
boxshade-3.3.1-1.8.i586.rpm Pretty Printing and Shading of Multiple-alignment Files
boxshade-3.3.1-1.8.x86_64.rpm Pretty Printing and Shading of Multiple-alignment Files
bwa-0.7.17-2.7.x86_64.rpm Burrows-Wheeler Aligner
cadabra2-2.2.4-25.3.i586.rpm A computer algebra system for solving problems in field theory
cadabra2-2.2.4-25.3.x86_64.rpm A computer algebra system for solving problems in field theory
cadabra2-doc-2.2.4-25.3.i586.rpm A computer algebra system for solving problems in field theory
cadabra2-doc-2.2.4-25.3.x86_64.rpm A computer algebra system for solving problems in field theory
cadabra2-examples-2.2.4-25.3.i586.rpm A computer algebra system for solving problems in field theory
cadabra2-examples-2.2.4-25.3.x86_64.rpm A computer algebra system for solving problems in field theory
cadabra2-gui-2.2.4-25.3.i586.rpm GUI for cadabra2: computer algebra system for problems in field theory
cadabra2-gui-2.2.4-25.3.x86_64.rpm GUI for cadabra2: computer algebra system for problems in field theory
cblas-devel-20110120-7.28.i586.rpm CBLAS development files
cblas-devel-20110120-7.28.x86_64.rpm CBLAS development files
cblas-devel-32bit-20110120-7.28.x86_64.rpm CBLAS development files
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