Gambit-0.4.145-1.19.i586.rpm


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Description

Gambit - GUI application for sequence visualization and analysis

Property Value
Distribution openSUSE Tumbleweed
Repository Science all
Package name Gambit
Package version 0.4.145
Package release 1.19
Package architecture i586
Package type rpm
Installed size 1.11 MB
Download size 367.15 KB
Official Mirror widehat.opensuse.org
This software takes advantage of the indexing features of the (fairly) recently standardized BAM sequence alignment format that allows rapid access to genomic data, with minimal startup time and re-rendering delay. Gambit also supports a variety of annotation formats (BED, GFF, GFF3, VCF) ?out-of-the-box? for displaying gene/region annotations as well as SNP entries.
Bioinformatics analysis of sequence data currently requires specialized expertise and is rapidly becoming a bottleneck. Analysis needs of smaller biology laboratories can be served if the visualization software integrates essential analytical functionality. Such functionality includes PCR primer design to support candidate SNP validation experiments; connecting to common databases; exporting data from specific regions of the chromosome for detailed and focused analysis.

Alternatives

Package Version Architecture Repository
Gambit-0.4.145-1.19.x86_64.rpm 0.4.145 x86_64 Science
Gambit - - -

Requires

Name Value
libQtCore.so.4 -
libQtGui.so.4 -
libc.so.6(GLIBC_2.1.3) -
libgcc_s.so.1 -
libgcc_s.so.1(GCC_3.0) -
libstdc++.so.6 -
libstdc++.so.6(CXXABI_1.3) -
libstdc++.so.6(GLIBCXX_3.4) -
libz.so.1 -

Provides

Name Value
Gambit = 0.4.145-1.19
Gambit(x86-32) = 0.4.145-1.19
application() -
application(Gambit.desktop) -
libgambit_fileformat_bam.so -
libgambit_fileformat_bed.so -
libgambit_fileformat_fasta.so -
libgambit_fileformat_gff.so -
libgambit_fileformat_gff3.so -
libgambit_fileformat_vcf.so -

Download

Type URL
Binary Package Gambit-0.4.145-1.19.i586.rpm
Source Package Gambit-0.4.145-1.19.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Tumbleweed/ science
  2. Install Gambit rpm package:
    # zypper install Gambit

Files

Path
/usr/bin/Gambit
/usr/lib/Gambit/
/usr/lib/Gambit/plugins/libgambit_fileformat_bam.so
/usr/lib/Gambit/plugins/libgambit_fileformat_bed.so
/usr/lib/Gambit/plugins/libgambit_fileformat_fasta.so
/usr/lib/Gambit/plugins/libgambit_fileformat_gff.so
/usr/lib/Gambit/plugins/libgambit_fileformat_gff3.so
/usr/lib/Gambit/plugins/libgambit_fileformat_vcf.so
/usr/share/applications/Gambit.desktop
/usr/share/doc/packages/Gambit/LICENSE
/usr/share/doc/packages/Gambit/README

See Also

Package Description
Genepop-4.5.1-1.40.i586.rpm Population Genetics Program
Genepop-4.5.1-1.40.x86_64.rpm Population Genetics Program
HepMC-devel-3.0.0-7.24.i586.rpm Header files for HepMC
HepMC-devel-3.0.0-7.24.x86_64.rpm Header files for HepMC
HepMC2-devel-2.06.09-9.20.i586.rpm Header files for HepMC
HepMC2-devel-2.06.09-9.20.x86_64.rpm Header files for HepMC
Herwig-devel-7.1.3-20.15.x86_64.rpm Multi purpose event generator for high energy physics
Herwig-libs-7.1.3-20.15.x86_64.rpm Multi purpose event generator for high energy physics
Ipopt-devel-3.11.9-1.54.i586.rpm Development and header files for Ipopt
Ipopt-devel-3.11.9-1.56.x86_64.rpm Development and header files for Ipopt
LHAPDF-devel-6.2.1-33.2.i586.rpm Development files for LHAPDF, a library for PDF sets
LHAPDF-devel-6.2.1-33.2.x86_64.rpm Development files for LHAPDF, a library for PDF sets
LiE-2.2.2-14.205.i586.rpm A Computer algebra package for Lie group computations
LiE-2.2.2-14.205.x86_64.rpm A Computer algebra package for Lie group computations
LiE-doc-2.2.2-14.205.i586.rpm A Computer algebra package for Lie group computations
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