vcftools-0.1.15-lp150.2.1.x86_64.rpm


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Description

vcftools - Tools for manipulating VCF files (Variant Call Format)

Property Value
Distribution openSUSE Leap 15.0
Repository Science all
Package filename vcftools-0.1.15-lp150.2.1.x86_64.rpm
Package name vcftools
Package version 0.1.15
Package release lp150.2.1
Package architecture x86_64
Package type rpm
Category Productivity/Scientific/Other
Homepage https://vcftools.github.io/
License GPL-3.0-only
Maintainer -
Download size 388.24 KB
Installed size 1.29 MB
VCFtools is a set of tools written in Perl and C++ for working with VCF files (Variant Call Format), such as those generated by the 1000 Genomes Project.

Alternatives

Package Version Architecture Repository
vcftools - - -

Requires

Name Value
/usr/bin/perl -
libc.so.6(GLIBC_2.15)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.11)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.20)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.21)(64bit) -
libstdc++.so.6(GLIBCXX_3.4.9)(64bit) -
libz.so.1()(64bit) -
libz.so.1(ZLIB_1.2.0)(64bit) -
libz.so.1(ZLIB_1.2.3.5)(64bit) -
perl -

Provides

Name Value
perl(FaSlice) -
perl(Vcf) -
perl(Vcf3_2) -
perl(Vcf3_3) -
perl(Vcf4_0) -
perl(Vcf4_1) -
perl(Vcf4_2) -
perl(Vcf4_3) -
perl(VcfReader) -
perl(VcfStats) -
vcftools = 0.1.15-lp150.2.1
vcftools(x86-64) = 0.1.15-lp150.2.1

Download

Type URL
Mirror widehat.opensuse.org
Binary Package vcftools-0.1.15-lp150.2.1.x86_64.rpm
Source Package vcftools-0.1.15-lp150.2.1.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Leap_15.0/ science
  2. Install vcftools rpm package:
    # zypper install vcftools

Files

Path
/usr/bin/fill-aa
/usr/bin/fill-an-ac
/usr/bin/fill-fs
/usr/bin/fill-ref-md5
/usr/bin/vcf-annotate
/usr/bin/vcf-compare
/usr/bin/vcf-concat
/usr/bin/vcf-consensus
/usr/bin/vcf-contrast
/usr/bin/vcf-convert
/usr/bin/vcf-fix-newlines
/usr/bin/vcf-fix-ploidy
/usr/bin/vcf-indel-stats
/usr/bin/vcf-isec
/usr/bin/vcf-merge
/usr/bin/vcf-phased-join
/usr/bin/vcf-query
/usr/bin/vcf-shuffle-cols
/usr/bin/vcf-sort
/usr/bin/vcf-stats
/usr/bin/vcf-subset
/usr/bin/vcf-to-tab
/usr/bin/vcf-tstv
/usr/bin/vcf-validator
/usr/bin/vcftools
/usr/lib/perl5/vendor_perl/5.26.1/x86_64-linux-thread-multi/FaSlice.pm
/usr/lib/perl5/vendor_perl/5.26.1/x86_64-linux-thread-multi/Vcf.pm
/usr/lib/perl5/vendor_perl/5.26.1/x86_64-linux-thread-multi/VcfStats.pm
/usr/share/doc/packages/vcftools/README.md
/usr/share/licenses/vcftools/LICENSE
/usr/share/man/man1/vcftools.1.gz

Changelog

2018-07-12 - flyos@mailoo.org
- Fixed issues with pm files location
- Fixed issues in shebang for perl files
- Clean spec file using spec-cleaner
- Update to 0.1.15
* Minor release to include recent small code changes.
* Output in LDhelmet format
* Minor bug fixes.
2016-05-05 - flyos@mailoo.org
- Initial release

See Also

Package Description
viennacl-devel-1.7.1-lp150.1.3.x86_64.rpm Linear algebra and solver library using CUDA, OpenCL, and OpenMP
vis5d+-1.3.0-lp150.2.16.x86_64.rpm A free volumetric rendering program
vis5d+-devel-1.3.0-lp150.2.16.x86_64.rpm Headers and libraries for vis5d+
vis5d+-devel-static-1.3.0-lp150.2.16.x86_64.rpm Static libraries for vis5d+
voro++-0.4.6-lp150.8.9.x86_64.rpm Voronoi tessellation library
voro++-devel-0.4.6-lp150.8.9.x86_64.rpm Development headers and libraries for voro++
votca-csg-1.5-lp150.3.1.x86_64.rpm VOTCA coarse-graining engine
votca-csg-bash-1.5-lp150.3.1.noarch.rpm Bash completion for votca
votca-csg-common-1.5-lp150.3.1.noarch.rpm Architecture-independent data files for VOTCA CSG
votca-csg-devel-1.5-lp150.3.1.x86_64.rpm Development headers and libraries for the VOTCA Coarse Graining Engine
votca-csg-doc-1.5-lp150.3.1.noarch.rpm Manual for VOTCA Coarse Graining Engine
votca-csg-tutorials-1.5-lp150.3.1.noarch.rpm Tutorial documentation for VOTCA Coarse Graining Engine
votca-csgapps-1.5-lp150.1.1.x86_64.rpm VOTCA coarse-graining engine applications
votca-ctp-1.5-lp150.7.1.x86_64.rpm VOTCA charge transport module
votca-ctp-common-1.5-lp150.7.1.noarch.rpm Architecture-independent data files for VOTCA CTP
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