samtools-legacy-0.1.19-lp150.3.16.x86_64.rpm


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Description

samtools-legacy - Tools for manipulating next-generation sequencing data

Property Value
Distribution openSUSE Leap 15.0
Repository Science all
Package filename samtools-legacy-0.1.19-lp150.3.16.x86_64.rpm
Package name samtools-legacy
Package version 0.1.19
Package release lp150.3.16
Package architecture x86_64
Package type rpm
Category Productivity/Scientific/Other
Homepage http://samtools.sourceforge.net/
License MIT
Maintainer -
Download size 439.48 KB
Installed size 1.06 MB
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.
This is the legacy version which does not use the HTSlib and is required by some software.

Alternatives

Package Version Architecture Repository
samtools-legacy - - -

Requires

Name Value
/usr/bin/env -
/usr/bin/perl -
libbam1 = 0.1.19-lp150.3.16
libc.so.6(GLIBC_2.15)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libm.so.6(GLIBC_2.23)(64bit) -
libncurses.so.6()(64bit) -
libncurses.so.6(NCURSEST6_5.7.20081102)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libpthread.so.0(GLIBC_2.3.2)(64bit) -
libtinfo.so.6()(64bit) -
libtinfo.so.6(NCURSES6_TINFO_5.0.19991023)(64bit) -
libtinfo.so.6(NCURSES6_TINFO_5.7.20081102)(64bit) -
libz.so.1()(64bit) -
libz.so.1(ZLIB_1.2.0)(64bit) -
libz.so.1(ZLIB_1.2.2)(64bit) -
libz.so.1(ZLIB_1.2.3.3)(64bit) -
perl -

Provides

Name Value
samtools-legacy = 0.1.19-lp150.3.16
samtools-legacy(x86-64) = 0.1.19-lp150.3.16

Conflicts

Name Value
samtools -

Download

Type URL
Mirror widehat.opensuse.org
Binary Package samtools-legacy-0.1.19-lp150.3.16.x86_64.rpm
Source Package samtools-legacy-0.1.19-lp150.3.16.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Leap_15.0/ science
  2. Install samtools-legacy rpm package:
    # zypper install samtools-legacy

Files

Path
/usr/bin/bcftools
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/psl2sam.pl
/usr/bin/razip
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/vcfutils.pl
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/packages/samtools-legacy/AUTHORS
/usr/share/doc/packages/samtools-legacy/COPYING
/usr/share/doc/packages/samtools-legacy/ChangeLog.old
/usr/share/doc/packages/samtools-legacy/INSTALL
/usr/share/doc/packages/samtools-legacy/NEWS
/usr/share/doc/packages/samtools-legacy/README.bcftools
/usr/share/doc/packages/samtools-legacy/bcf.tex
/usr/share/doc/packages/samtools-legacy/examples/00README.txt
/usr/share/doc/packages/samtools-legacy/examples/Makefile
/usr/share/doc/packages/samtools-legacy/examples/bam2bed.c
/usr/share/doc/packages/samtools-legacy/examples/calDepth.c
/usr/share/doc/packages/samtools-legacy/examples/chk_indel.c
/usr/share/doc/packages/samtools-legacy/examples/ex1.fa
/usr/share/doc/packages/samtools-legacy/examples/ex1.sam.gz
/usr/share/doc/packages/samtools-legacy/examples/toy.fa
/usr/share/doc/packages/samtools-legacy/examples/toy.sam
/usr/share/man/man1/samtools.1.gz

Changelog

2016-05-04 - flyos@mailoo.org
- Fixed dependency on Perl and cleaned spec file.
2016-05-04 - flyos@mailoo.org
- samtools-legacy should depend on libbam1 (fixed).
2016-04-20 - flyos@mailoo.org
Release from Fedora specs and last source from legacy samtools (0.1.19).

See Also

Package Description
samtools-legacy-devel-0.1.19-lp150.3.16.x86_64.rpm Header files and libraries for compiling against samtools-legacy
scalapack-mvapich2-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (mvapich2)
scalapack-openmpi-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi1)
scalapack-openmpi2-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi2)
scalapack-openmpi3-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi3)
scalapack_2_0_2-gnu-mpich-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-mpich-hpc
scalapack_2_0_2-gnu-mpich-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (mpich)
scalapack_2_0_2-gnu-mvapich2-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-mvapich2-hpc
scalapack_2_0_2-gnu-mvapich2-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (mvapich2)
scalapack_2_0_2-gnu-openmpi1-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-openmpi1-hpc
scalapack_2_0_2-gnu-openmpi1-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi1)
scalapack_2_0_2-gnu-openmpi2-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-openmpi2-hpc
scalapack_2_0_2-gnu-openmpi2-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi2)
scalapack_2_0_2-gnu-openmpi3-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-openmpi3-hpc
scalapack_2_0_2-gnu-openmpi3-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi3)
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