samtools-1.9-lp150.1.1.x86_64.rpm


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Description

samtools - Tools for manipulating next-generation sequencing data

Property Value
Distribution openSUSE Leap 15.0
Repository Science all
Package filename samtools-1.9-lp150.1.1.x86_64.rpm
Package name samtools
Package version 1.9
Package release lp150.1.1
Package architecture x86_64
Package type rpm
Category Productivity/Scientific/Other
Homepage http://www.htslib.org/
License MIT
Maintainer -
Download size 335.23 KB
Installed size 891.80 KB
Samtools implements various utilities for post-processing alignments in the
SAM, BAM, and CRAM formats, including indexing, variant calling (in conjunction
with bcftools), and a simple alignment viewer.

Alternatives

Package Version Architecture Repository
samtools - - -

Requires

Name Value
/usr/bin/perl -
/usr/bin/python -
bgzip -
htsfile -
libc.so.6(GLIBC_2.14)(64bit) -
libhts.so.2()(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libncursesw.so.6()(64bit) -
libncursesw.so.6(NCURSESTW6_5.7.20081102)(64bit) -
libpthread.so.0()(64bit) -
libpthread.so.0(GLIBC_2.2.5)(64bit) -
libtinfo.so.6()(64bit) -
libtinfo.so.6(NCURSES6_TINFO_5.0.19991023)(64bit) -
libtinfo.so.6(NCURSES6_TINFO_5.7.20081102)(64bit) -
libz.so.1()(64bit) -
perl -
python -
tabix -

Provides

Name Value
samtools = 1.9-lp150.1.1
samtools(x86-64) = 1.9-lp150.1.1

Download

Type URL
Mirror widehat.opensuse.org
Binary Package samtools-1.9-lp150.1.1.x86_64.rpm
Source Package samtools-1.9-lp150.1.1.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Leap_15.0/ science
  2. Install samtools rpm package:
    # zypper install samtools

Files

Path
/usr/bin/ace2sam
/usr/bin/blast2sam.pl
/usr/bin/bowtie2sam.pl
/usr/bin/export2sam.pl
/usr/bin/interpolate_sam.pl
/usr/bin/maq2sam-long
/usr/bin/maq2sam-short
/usr/bin/md5fa
/usr/bin/md5sum-lite
/usr/bin/novo2sam.pl
/usr/bin/plot-bamstats
/usr/bin/psl2sam.pl
/usr/bin/sam2vcf.pl
/usr/bin/samtools
/usr/bin/samtools.pl
/usr/bin/seq_cache_populate.pl
/usr/bin/soap2sam.pl
/usr/bin/varfilter.py
/usr/bin/wgsim
/usr/bin/wgsim_eval.pl
/usr/bin/zoom2sam.pl
/usr/share/doc/packages/samtools/NEWS
/usr/share/doc/packages/samtools/README
/usr/share/licenses/samtools/LICENSE
/usr/share/man/man1/samtools.1.gz
/usr/share/man/man1/wgsim.1.gz

See Also

Package Description
samtools-legacy-0.1.19-lp150.3.16.x86_64.rpm Tools for manipulating next-generation sequencing data
samtools-legacy-devel-0.1.19-lp150.3.16.x86_64.rpm Header files and libraries for compiling against samtools-legacy
scalapack-mvapich2-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (mvapich2)
scalapack-openmpi-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi1)
scalapack-openmpi2-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi2)
scalapack-openmpi3-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi3)
scalapack_2_0_2-gnu-mpich-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-mpich-hpc
scalapack_2_0_2-gnu-mpich-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (mpich)
scalapack_2_0_2-gnu-mvapich2-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-mvapich2-hpc
scalapack_2_0_2-gnu-mvapich2-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (mvapich2)
scalapack_2_0_2-gnu-openmpi1-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-openmpi1-hpc
scalapack_2_0_2-gnu-openmpi1-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi1)
scalapack_2_0_2-gnu-openmpi2-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-openmpi2-hpc
scalapack_2_0_2-gnu-openmpi2-hpc-test-2.0.2-lp150.55.1.x86_64.rpm Test programs for ScaLAPACK (openmpi2)
scalapack_2_0_2-gnu-openmpi3-hpc-module-2.0.2-lp150.55.1.x86_64.rpm Module files for scalapack_2_0_2-gnu-openmpi3-hpc
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