muscle-3.8.31-lp150.1.17.x86_64.rpm


Advertisement

Description

muscle - Multiple Alignment Program

Property Value
Distribution openSUSE Leap 15.0
Repository Science all
Package filename muscle-3.8.31-lp150.1.17.x86_64.rpm
Package name muscle
Package version 3.8.31
Package release lp150.1.17
Package architecture x86_64
Package type rpm
Category Productivity/Scientific/Other
Homepage http://www.drive5.com/muscle
License SUSE-Public-Domain
Maintainer -
Download size 166.25 KB
Installed size 428.09 KB
MUSCLE is a program for creating multiple alignments of amino acid or
nucleotide sequences. A range of options is provided that give you the choice
of optimizing accuracy, speed, or some compromise between the two. Default
parameters are those that give the best average accuracy in our tests. Using
versions current at the time of writing, my tests show that MUSCLE can achieve
both better average accuracy and better speed than CLUSTALW or T‑Coffee,
depending on the chosen options.
Edgar, Robert C. (2004), MUSCLE: multiple sequence alignment with high accuracy
and high throughput, Nucleic Acids Research 32(5), 1792-97.

Alternatives

Package Version Architecture Repository
muscle - - -

Requires

Name Value
libc.so.6(GLIBC_2.14)(64bit) -
libgcc_s.so.1()(64bit) -
libgcc_s.so.1(GCC_3.0)(64bit) -
libm.so.6()(64bit) -
libm.so.6(GLIBC_2.2.5)(64bit) -
libstdc++.so.6()(64bit) -
libstdc++.so.6(CXXABI_1.3)(64bit) -
libstdc++.so.6(CXXABI_1.3.9)(64bit) -
libstdc++.so.6(GLIBCXX_3.4)(64bit) -

Provides

Name Value
muscle = 3.8.31-lp150.1.17
muscle(x86-64) = 3.8.31-lp150.1.17

Download

Type URL
Mirror widehat.opensuse.org
Binary Package muscle-3.8.31-lp150.1.17.x86_64.rpm
Source Package muscle-3.8.31-lp150.1.17.src.rpm

Install Howto

  1. Add the Science repository:
    # zypper addrepo http://widehat.opensuse.org/opensuse/repositories/science/openSUSE_Leap_15.0/ science
  2. Install muscle rpm package:
    # zypper install muscle

Files

Path
/usr/bin/muscle

Changelog

2011-04-23 - Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> 3.8.31-1
- Update to version 3.8.31
2009-12-18 - Vimalkumar Velayudhan <vimalkumar_v@bioinformatics.org> - 3.7-1
- Initial package created

See Also

Package Description
nauty-2.6.11-lp150.10.1.x86_64.rpm Tools for computing automorphism groups of graphs
nauty-devel-2.6.11-lp150.10.1.x86_64.rpm Development files for nauty, a math library
ncbi-blast+-2.7.1-lp150.2.1.x86_64.rpm NCBI BLAST finds regions of similarity between biological sequences
ncbi-blast-6.1-lp150.7.1.x86_64.rpm Basic Local Alignment and Search Tool
ncbi-data-6.1-lp150.7.1.x86_64.rpm NCBI toolkit data files
ncbi-devel-6.1-lp150.7.1.x86_64.rpm NCBI toolkit header files needed for development
ncbi-tools-6.1-lp150.7.1.x86_64.rpm Utilities from the NCBI toolkit
ncbi-wwwblast-6.1-lp150.7.1.x86_64.rpm Web-interface to the NCBI BLAST set of programs
nco-4.7.8-lp150.1.1.aarch64.rpm Suite of programs for manipulating NetCDF/HDF files
nco-4.7.8-lp150.1.1.x86_64.rpm Suite of programs for manipulating NetCDF/HDF files
nco-doc-4.7.8-lp150.1.1.aarch64.rpm Documentation for nco
nco-doc-4.7.8-lp150.1.1.x86_64.rpm Documentation for nco
netcdf-4.6.1-lp150.84.1.x86_64.rpm Command-line programs for the NetCDF scientific data format
netcdf-cxx4-gnu-hpc-tools-4.3.0-lp150.41.1.noarch.rpm Dependency package for netcdf-cxx4_4_3_0-gnu-hpc-tools
netcdf-cxx4-tools-4.3.0-lp150.41.2.noarch.rpm Tools for working with the netcdf4 C++ library
Advertisement
Advertisement